Publications

“Rational optimization of tolC as a powerful dual selectable marker for genome engineering.” Christopher J. Gregg, Marc J .Lajoie, Michael G. Napolitano, Joshua A. Mosberg, Daniel B. Goodman, John Aach, Farren J. Isaacs, George M Church. Nucleic acids research. gtk1374. 2014.

“Causes and effects of N-Terminal codon bias in bacterial genes.”  Daniel B. Goodman, George M. Church, and Sriram Kosuri. Science. 6157:475-479 2013 [pdf] [web]

“Genomically recoded organisms expand biological functions.” Marc J. Lajoie, Alexis J. Rovner, Daniel B. Goodman, Hans-Rudolf Aerni, Adrian D. Haimovich, Gleb Kuznetsov, Jaron A. Mercer, Harris H. Wang, Peter A. Carr, Joshua A. Mosberg, Nadin Rohland, Peter G. Schultz, Joseph M. Jacobson, Jesse Rinehart, George M. Church, Farren J. Isaacs. Science. 6156:357-360 2013

“Composability of regulatory sequences controlling transcription and translation in Escherichia coli.”  Sriram Kosuri*, Daniel B. Goodman*, Guillaume Cambray, Vivek K. Mutalik, Yuan Gao, Adam P. Arkin, Drew Endy, and George M. Church. PNAS. Aug 7, 2013. [pdf] [web]
*: These authors contributed equally to this work.

“Precise Manipulation of Chromosomes in Vivo Enables Genome-Wide Codon Replacement.” Farren J. Isaacs, Peter A. Carr, Harris H. Wang, Marc J. Lajoie, Bram Sterling, Laurens Kraal, Andrew C. Tolonen, Tara A. Gianoulis, Daniel B. Goodman, Nikos B. Reppas, Christopher J. Emig, Duhee Bang, Samuel J. Hwang, Michael C. Jewett, Joseph M. Jacobson, George M. Church. Science. 6040:348-353, 2011 [pdf] [web]

“Product Length, Dye Choice, and Detection Chemistry in the Bead-Emulsion Amplification of Millions of Single DNA Molecules in Parallel.” I. Tiemann-Boege, C. Curtis, D. N. Shinde, D. B. Goodman, S. Tavaré , N. Arnheim. Analytical Chemistry. 81:5770-5776, 2009 [pdf]

“Comparative Proteogenomics: Combining Mass Spectrometry and Comparative Genomics to Analyze Multiple Genomes.” N, Gupta, J. Benhamida, V. Bhargava, D. Goodman, E. Kain, I. Kerman, N. Nguyen, N, Ollikainen, J. Rodriguez, J. Wang, M. S. Lipton, M. Romine, V. Bafna, R. D. Smith, P. Pevzner. Genome Res. 18:1133-1142, 2008 [pdf]

Acknowledgement: “In Silico Elucidation of the Molecular Mechanism Defining the Adverse Effect of Selective Estrogen Receptor Modulators.” L. Xie, J. Wang, P. E. Bourne. PLOS Comp. Biol. 3(11): e217, November 2007. [pdf]

“Baculovirus Phylogeny Based on Genome Rearrangements.” D. Goodman, N. Ollikainen, C. Sholley. Lecture Notes in Computer Science, Vol 4751, 69-82. Springer, 2007. [pdf]

“Automated Multiplexed Multidensity Microfluidic (M3) Cell Sensing Based on Electrical Gain measurements.” J. Collins, D. Lavigne, Y. Lin, D. Goodman, P. Irwan, A.P. Lee. Conference Paper: IEEE EMBS Special Topic Conference on Microtechnologies in Medicine and Biology, May 2005.

“Nanofluidic channel engineering using laminar flow layer-by-layer deposition of polyelectrolytes.” J. Collins, D. Goodman, P. Delhaes, A.P. Lee. Conference Paper: ASME Integrated Nanosystems & Nanotechnology Showcase, September 2004.


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